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Currently Watching: Latest videos by euplotes
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MRI Scan of Human Head Posted by: euplotes
Video duration: 59 seconds 3D reconstruction of human head MRI scan. Techniques used: 3D segmentation, transparent isosurfacing, dynamic slicing. Related: 3d, brain, head, human, mri, scan, science, visualization |
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Carbon nanotube real-time deformation Posted by: euplotes
Video duration: 57 seconds Real-time deformation of (3,3) carbon nanotube. Simulation performed within Biodesigner/Nanomorp h environment using GAFF force field. Related: carbon, molecular, nanotechnology, nanotube, simulation |
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Ion channel Posted by: euplotes
Video duration: 53 seconds Animation of potassium ion channel. Related: 3d, animation, channel, computer, ion, molecule, science, scientific, visualization |
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Rotaxane Posted by: euplotes
Video duration: 87 seconds Molecular dynamics of a rotaxane system. A macrocycle molecule can shift along a dumbbell-shaped molecule. Molecular modeling and simulation using Biodesigner software. Related: chemistry, modeling, molecular, rotaxane, supramolecular |
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C60 Fullerene and Carbon Nanotube Interaction Posted by: euplotes
Video duration: 75 seconds Animation of a C60 fullerene molecule pulled through a short fragment of (10,5) carbon nanotube. Simulated in real-time within Biodesigner/Nanomorp h environment using GAFF force field. Related: c60, carbon, fullerene, molecular, nanotechnology, nanotube, simulation |
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Nanotube - nanotube interaction Posted by: euplotes
Video duration: 55 seconds Two (3,3) carbon nanotubes manipulated in real-time. Simulated within Biodesigner/Nanomorp h environment using GAFF force field. Related: dynamics, interactive, molecular, nanotechnology, nanotube, simulation |
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Octanitrocubane Posted by: euplotes
Video duration: 112 seconds Octanitrocubane is one of the most powerful conventional explosives known to human, almost twice as effective as TNT. It was first synthesised in 2000 (Zhang, Eaton and Gilardi, "Hepta- and Octanitrocubanes," Angewandte Chemie, 39, 2000). Modeling and molecular dynamics simulation made using Biodesigner software. Related: modeling, molecular, octanitrocubane |
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Nanotube flight Posted by: euplotes
Video duration: 38 seconds Virtual flight through a carbon nanotube. This animation doesn't have any particular meaning, it is just a demonstration of molecular visualization capabilities of a program I've been working on. Check out other nanotube videos: http://www.youtub e.com/watch?v=POz3TI CpW6s http://www.youtub e.com/watch?v=n8dsHu _ErwE http://www.youtub e.com/watch?v=t-jysi 95wb4 Related: 3d, computer, graphics, molecular, nanotechnology, nanotube, scientific, visualization |
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Cyclohexanol in water Posted by: euplotes
Video duration: 98 seconds Real-time molecular dynamics simulation of cyclohexanol molecule in water. Periodic boundary conditions (box size 15A), temperature = 300K. Simulated within Biodesigner program using GAFF force field. Related: cyclohexane, dynamics, molecular, simulation |
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CT scan skull fly-through Posted by: euplotes
Video duration: 51 seconds Volume and isosurface rendering of human head CT scan. Data source: Visual Human Project, NLM NIH Related: cat, ct, head, human, project, rendering, scan, skull, visual |
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Bacteriophage T4 Posted by: euplotes
Video duration: 61 seconds Bacteriophage T4 virus head surface rendering. Data source: EBI Macromolecular Structure Database. Related: bacteriophage, t4, virus |
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Virtual creature Posted by: euplotes
Video duration: 35 seconds A virtual creature made using Lindenmayer system (L-System) fractal generator. Related: creature, fractal, l-system, rendering, virtual |
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Nanoballoon - C60 fullerene filled with argon atoms Posted by: euplotes
Video duration: 49 seconds Simple (and totally unrealistic) simulation of C60 fullerene intercalated with four argon atoms. The atoms are colored according to a force field gradient. The argon spheres size corresponds to van der Waals radius. Performed in real-time using Biodesigner software and GAFF force field. Related: argon, atoms, c60, fullerene, molecular, nanotechnology, simulation |
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Flagellar motor Posted by: euplotes
Video duration: 25 seconds Electron density structure of bacterial flagellar motor (published by Murphy, G.E. et al. in Nature, 2006) Data source: EBI Macromolecular Structure Database. Related: 3d, bacterial, computer, flagellar, graphics, motor, primitia, scientific, treponema, visualization |
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Fullerene construction Posted by: euplotes
Video duration: 130 seconds Constructing a buckminsterfullerene (C60) molecule with real time structure optimization. Each triangular prism represents an sp2 carbon atom. The colors correspond to a number of bonds of each atom. Related: buckminsterfullerene, c60, fullerene, modeling, molecular |
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Human head volume rendering Posted by: euplotes
Video duration: 47 seconds Volume rendering of human head MRI scan and brain extraction. Data source: Chris Rorden/Paul Morgan. MRIcro software sample dataset. Related: brain, human, mri, rendering, scientific, visualization, volume |
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Mouse embryo Posted by: euplotes
Video duration: 66 seconds 3D rendering of micro MRI scan of mouse embryo (Theiler stage 19). Orthogonal cast planes and isosurface dynamic region of interest. Data source: Caltech microMRI Atlas of Mouse Development. Related: 3d, embryo, micro, mouse, mri, rendering |
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Protein G B1 domain Posted by: euplotes
Video duration: 39 seconds Immunoglobuline-bind ing domain of protein G. Demonstration of various rendering styles and depth-of-field effect. A tryptophan residuum is displayed as a full-atom model. Related: molecular, protein, rendering, visualization |
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IFS Flame Fractal Morphing Posted by: euplotes
Video duration: 61 seconds Yet another flame fractal animation. Related: flame, fractal, ifs, morphing |
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Vitamin D receptor molecular surface Posted by: euplotes
Video duration: 32 seconds Solvent excluded surface of vitamin D receptor protein. Related: molecular, receptor, scientific, surface, vdr, visualization, vitamin |
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Adamantane Posted by: euplotes
Video duration: 50 seconds Modeling and molecular dynamics simulation of adamantane (C10H16), a polycyclic alkane. It is arguably one of the most beautiful organic molecules. Modeling and visualization using Biodesigner program. Related: adamantane, dynamics, modeling, molecular |






















