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Currently Watching: Latest videos by euplotes





MRI Scan of Human Head MRI Scan of Human Head
Posted by: euplotes

Video duration: 59 seconds

3D reconstruction of human head MRI scan.
Techniques used: 3D segmentation, transparent isosurfacing, dynamic slicing.

Related: 3d, brain, head, human, mri, scan, science, visualization

Carbon nanotube real-time deformation Carbon nanotube real-time deformation
Posted by: euplotes

Video duration: 57 seconds

Real-time deformation of (3,3) carbon nanotube.
Simulation performed within Biodesigner/Nanomorp h environment using GAFF force field.

Related: carbon, molecular, nanotechnology, nanotube, simulation

Ion channel Ion channel
Posted by: euplotes

Video duration: 53 seconds

Animation of potassium ion channel.

Related: 3d, animation, channel, computer, ion, molecule, science, scientific, visualization

Rotaxane Rotaxane
Posted by: euplotes

Video duration: 87 seconds

Molecular dynamics of a rotaxane system. A macrocycle molecule can shift along a dumbbell-shaped molecule.
Molecular modeling and simulation using Biodesigner software.

Related: chemistry, modeling, molecular, rotaxane, supramolecular

C60 Fullerene and Carbon Nanotube Interaction C60 Fullerene and Carbon Nanotube Interaction
Posted by: euplotes

Video duration: 75 seconds

Animation of a C60 fullerene molecule pulled through a short fragment of (10,5) carbon nanotube.
Simulated in real-time within Biodesigner/Nanomorp h environment using GAFF force field.

Related: c60, carbon, fullerene, molecular, nanotechnology, nanotube, simulation

Nanotube - nanotube interaction Nanotube - nanotube interaction
Posted by: euplotes

Video duration: 55 seconds

Two (3,3) carbon nanotubes manipulated in real-time.
Simulated within Biodesigner/Nanomorp h environment using GAFF force field.

Related: dynamics, interactive, molecular, nanotechnology, nanotube, simulation

Octanitrocubane Octanitrocubane
Posted by: euplotes

Video duration: 112 seconds

Octanitrocubane is one of the most powerful conventional explosives known to human, almost twice as effective as TNT. It was first synthesised in 2000 (Zhang, Eaton and Gilardi, "Hepta- and Octanitrocubanes," Angewandte Chemie, 39, 2000).
Modeling and molecular dynamics simulation made using Biodesigner software.

Related: modeling, molecular, octanitrocubane

Nanotube flight Nanotube flight
Posted by: euplotes

Video duration: 38 seconds

Virtual flight through a carbon nanotube.
This animation doesn't have any particular meaning, it is just a demonstration of molecular visualization capabilities of a program I've been working on.
Check out other nanotube videos:
http://www.youtub e.com/watch?v=POz3TI CpW6s
http://www.youtub e.com/watch?v=n8dsHu _ErwE
http://www.youtub e.com/watch?v=t-jysi 95wb4

Related: 3d, computer, graphics, molecular, nanotechnology, nanotube, scientific, visualization

Cyclohexanol in water Cyclohexanol in water
Posted by: euplotes

Video duration: 98 seconds

Real-time molecular dynamics simulation of cyclohexanol molecule in water. Periodic boundary conditions (box size 15A), temperature = 300K.
Simulated within Biodesigner program using GAFF force field.

Related: cyclohexane, dynamics, molecular, simulation

CT scan skull fly-through CT scan skull fly-through
Posted by: euplotes

Video duration: 51 seconds

Volume and isosurface rendering of human head CT scan. Data source: Visual Human Project, NLM NIH

Related: cat, ct, head, human, project, rendering, scan, skull, visual

Bacteriophage T4 Bacteriophage T4
Posted by: euplotes

Video duration: 61 seconds

Bacteriophage T4 virus head surface rendering.
Data source: EBI Macromolecular Structure Database.

Related: bacteriophage, t4, virus

Virtual creature Virtual creature
Posted by: euplotes

Video duration: 35 seconds

A virtual creature made using Lindenmayer system (L-System) fractal generator.

Related: creature, fractal, l-system, rendering, virtual

Nanoballoon - C60 fullerene filled with argon atoms Nanoballoon - C60 fullerene filled with argon atoms
Posted by: euplotes

Video duration: 49 seconds

Simple (and totally unrealistic) simulation of C60 fullerene intercalated with four argon atoms. The atoms are colored according to a force field gradient. The argon spheres size corresponds to van der Waals radius.
Performed in real-time using Biodesigner software and GAFF force field.

Related: argon, atoms, c60, fullerene, molecular, nanotechnology, simulation

Flagellar motor Flagellar motor
Posted by: euplotes

Video duration: 25 seconds

Electron density structure of bacterial flagellar motor (published by Murphy, G.E. et al. in Nature, 2006) Data source: EBI Macromolecular Structure Database.

Related: 3d, bacterial, computer, flagellar, graphics, motor, primitia, scientific, treponema, visualization

Fullerene construction Fullerene construction
Posted by: euplotes

Video duration: 130 seconds

Constructing a buckminsterfullerene (C60) molecule with real time structure optimization. Each triangular prism represents an sp2 carbon atom. The colors correspond to a number of bonds of each atom.

Related: buckminsterfullerene, c60, fullerene, modeling, molecular

Human head volume rendering Human head volume rendering
Posted by: euplotes

Video duration: 47 seconds

Volume rendering of human head MRI scan and brain extraction.
Data source: Chris Rorden/Paul Morgan. MRIcro software sample dataset.

Related: brain, human, mri, rendering, scientific, visualization, volume

Mouse embryo Mouse embryo
Posted by: euplotes

Video duration: 66 seconds

3D rendering of micro MRI scan of mouse embryo (Theiler stage 19). Orthogonal cast planes and isosurface dynamic region of interest.
Data source: Caltech microMRI Atlas of Mouse Development.

Related: 3d, embryo, micro, mouse, mri, rendering

Protein G B1 domain Protein G B1 domain
Posted by: euplotes

Video duration: 39 seconds

Immunoglobuline-bind ing domain of protein G. Demonstration of various rendering styles and depth-of-field effect. A tryptophan residuum is displayed as a full-atom model.

Related: molecular, protein, rendering, visualization

IFS Flame Fractal Morphing IFS Flame Fractal Morphing
Posted by: euplotes

Video duration: 61 seconds

Yet another flame fractal animation.

Related: flame, fractal, ifs, morphing

Vitamin D receptor molecular surface Vitamin D receptor molecular surface
Posted by: euplotes

Video duration: 32 seconds

Solvent excluded surface of vitamin D receptor protein.

Related: molecular, receptor, scientific, surface, vdr, visualization, vitamin

Adamantane Adamantane
Posted by: euplotes

Video duration: 50 seconds

Modeling and molecular dynamics simulation of adamantane (C10H16), a polycyclic alkane. It is arguably one of the most beautiful organic molecules.
Modeling and visualization using Biodesigner program.

Related: adamantane, dynamics, modeling, molecular

Paramecium Bursaria Chlorella Virus Capsid Structure Paramecium Bursaria Chlorella Virus Capsid Structure
Posted by: euplotes

Video duration: 64 seconds

Assembly of PCBV-1 (Paramecium Bursaria Chlorella Virus 1) capsid.

Related: 3d, animation, capsid, graphics, pbcv-1, virus